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The files included here are the code files needed to implement the geodesic integration schemes relevant to the manuscript: "Efficient molecular dynamics using geodesic integration and solvent-solute splitting" (Proceedings ...
We present a Matlab implementation of a novel, efficient pseudo-spectral collocation scheme for the solution of stiff, non-local, non-linear PDEs in one and two spatial dimensions. In particular, we compute the non-local ...
This dataset contains a deca-alanine trajectory analysed in paper "Local and Global Perspectives on Diffusion Maps in the Analysis of Molecular Systems" by Trstanova et.al. 2019. The trajectory was obtained using an ...
Data file for the submitted publication "Robustness of the microtubule network self-organization in epithelia" Combining mathematical modelling with genetic manipulations in Drosophila, we show that the microtubule self-organization indeed does not depend on dynamics of individual microtubules, and thus is robust on the tissue level.