Browsing Barker Group by Date Accessioned
Now showing items 1-12 of 12
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Gene trees for orthologous groups from "The evolution of nitrogen fixation in cyanobacteria"
Phylogenetic trees for the orthologous groups predicted across 49 taxa of Cyanobacteria and 16 Proteobacteria by Latysheva et al. (2012, Bioinformatics 28:603-606; doi:10.1093/bioinformatics/bts008) are provided here. For ... -
Preprocessed gene trees from "Xenolog Classification"
Preprocessed gene trees from 49 taxa of Cyanobacteria and 16 Proteobacteria used by Darby et al. (2017, Bioinformatics 33:640-649; doi:10.1093/bioinformatics/btw686) are provided here. These consist of trees for 13623 of ... -
Additional files for 'Comparison of the protein-coding genomes of three deep-sea, sulfur-oxidising bacteria: "Candidatus Ruthia magnifica", "Candidatus Vesicomyosocius okutanii" and Thiomicrospira crunogena'
Genome-wide protein sets input to OrthoMCL, OrthoMCL output, Perl script to count cross-species occurence of OrthoMCL groups, and output of Perl script, as used by McGill and Barker (2017, BMC Research Notes 10:296, ... -
simpops.mac: population time series simulation script from "The effects of environmental perturbation and measurement error on estimates of the shape parameter in the theta-logistic model of population regulation"
The simpops.mac script simulates population time series for investigation of the effects of underlying parameters, environmental perturbation, measurement error and time series length on the estimation of theta in the ... -
SUPERSEDED - Additional files for 'Using sound to understand protein sequence data: new sonification algorithms for protein sequences and multiple sequence alignments'
## This item has been replaced by the one which can be found at https://doi.org/10.7488/ds/3023 ## Supplementary data for Martin EJ, Meagher TR and Barker D, 'Using sound to understand protein sequence data: new sonification ... -
SUPERSEDED - Additional files for 'DNA sonification for public engagement in bioinformatics'
## This item has been replaced by the one which can be found at https://doi.org/10.7488/ds/3058 ## Supplementary data for Plaisier H, Meagher TR and Barker D, 'DNA sonification for public engagement in bioinformatics' (in ... -
Additional files for 'Using sound to understand protein sequence data: new sonification algorithms for protein sequences and multiple sequence alignments'
Supplementary data for Martin EJ, Meagher TR and Barker D, 'Using sound to understand protein sequence data: new sonification algorithms for protein sequences and multiple sequence alignments' (2021, BMC Bioinformatics ... -
Additional files for 'Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 2,4-diaminobutanoic acid (2,4-DAB)'
Supplementary data for Mantas MJQ, Nunn PB, Ke Z, Codd GA and Barker D 'Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 2,4-diaminobutanoic acid (2,4-DAB)' (2021, Phytochemistry ... -
Additional files for 'DNA sonification for public engagement in bioinformatics'
Supplementary data for Plaisier H, Meagher TR and Barker D, 'DNA sonification for public engagement in bioinformatics' (2021, BMC Research Notes 14:243, doi:10.1186/s13104-021-05685-7). For further details, see 'README.txt' ... -
Additional files for 'The evolution of nitrogen fixation in cyanobacteria'
Supplementary data for Latysheva N, Junker VL, Palmer WJ, Codd GA and Barker D, 'The evolution of nitrogen fixation in cyanobacteria' (2012, Bioinformatics 28:603-606, doi:10.1093/bioinformatics/bts008). This supplementary ... -
bms_runner: script using BayesTraits to implement methods from 'Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes'
This is version 1.4 of bms_runner, released in March 2011 (with an update to the manual in August 2012). bms_runner is a script written by Daniel Barker and Mark Pagel. bms_runner uses the separate program BayesTraits ... -
Additional files for 'Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 3-N-methyl-2,3-diaminopropanoic acid (BMAA)'
Supplementary data for Mantas MJQ, Nunn PB, Codd GA and Barker D 'Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 3-N-methyl-2,3-diaminopropanoic acid (BMAA)' (in prep.).
