Browsing Royal (Dick) School of Veterinary Studies by Title
Now showing items 32-51 of 91
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Gene expression in the cardiovascular system of the domestic sheep (Ovis aries)
This dataset includes gene expression estimates, from RNA-Seq, for seven cardiovascular and one skeletal muscle tissue from the sheep gene expression atlas dataset (https://journals.plos.org/plosgenetics/article?id=10.13 ... -
Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens
A README.txt file was uploaded with the data. -
The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics
"Metagenomic and proteomic datasets from: The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics Rob. D. Stewart, Marc D. Auffret, Amanda Warr, Alan Walker, ... -
GenOMICC Covid-19 critical illness summary statistics non-European ancestries
Non-European ancestries GWAS summary statistics for Covid-19 critical illness from the GenOMICC study -
GenOMICC Covid-19 summary statistics European ancestry
GWAS summary statistics for European ancestry, from the GenOMICC Covid-19 critical illness study. GWAS was performed with 1676 Europeans and 5*1676 controls and validated using 100K Genomics England controls and Generation ... -
hapbin: An efficient program for performing haplotype based scans for positive selection in large genomic datasets
These files contain genome-wide integrated haplotype scores (iHS) for each of the 26 populations in the phase 3 release of the 1000 genomes project. iHS were calculated using the hapbin program that can be downloaded from ... -
A high resolution atlas of gene expression in the domestic sheep (Ovis aries)
Sheep are a key source of meat, milk and fibre for the global livestock sector, and an important biomedical model. Global analysis of gene expression across multiple tissues has aided genome annotation and supported ... -
Identification of miRNAs associated with the follicular-luteal transition in the ruminant ovary
(University of Edinburgh. Roslin Institute, 2013-03-26)Little is known about the involvement of microRNAs (miRNAs) in the follicular-luteal transition. The aim of this study was to identify genome-wide changes in miRNAs associated with follicular differentiation in sheep. miRNA ... -
The impact of acute loud noise on the behaviour of laboratory birds - data
We examined whether exposure to a routine laboratory noise, a low-frequency fire alarm test, induced behavioural changes in laboratory zebra finches (Taeniopygia guttata). Twenty-four breeding pairs of zebra finches were ... -
"Increased Abundance of M cells in the Gut Epithelium Dramatically Enhances Oral Prion Disease Susceptibility"
Data supporting Donaldson et al "Increased Abundance of M cells in the Gut Epithelium Dramatically Enhances Oral Prion Disease Susceptibility" (In Submission). -
The Infectious Diseases of East African Livestock (IDEAL) Project Database - Stable Snapshot
The Infectious Diseases of East African Livestock (IDEAL) project was a longitudinal cohort study of calf health which was conducted in Western Kenya between 2007-2009. It collected information on 548 East African shorthorn ... -
Investigating early cellular and molecular responses to misfolded protein
PMDs such as AD, PD, HD and TSE are associated with the accumulation of abnormally folded proteins. However, the mechanisms involving seeding, processing and degradation of these rogue proteins are poorly understood. In ... -
lentiviral mediated apoE4 transduction in primary neuronal culture
To identify the molecular changes in signalling pathways triggered by altered apoE4 expression, we used lentiviral transduction to overexpress human apoE4 in 18-21 DIV primary hippocampal neurons. The molecular consequences ... -
Metagenome assembled rumen-uncultured genomes (RUGs)
DNA was sequenced from rumen contents from cattle, sheep, red deer and reindeer. We constructed 391 metagenome assembled rumen-uncultured genomes (RUGs). -
Microarray data CEL files supporting the paper "Microarray profiling emphasizes transcriptomic differences between hippocampal in vivo tissue and in vitro cultures"
Affymetrix microarray processing produced 16 (4 WT cell, 4 101LL cell, 4 WT tissue, 4 101LL tissue) probe cell intensity data (CEL) files. Primary hippocampal cell cultures are routinely used as an experimentally accessible ... -
A mini-atlas of gene expression for the domestic goat
The goat mini-atlas dataset includes 54 mRNA-Seq (poly-A selected) 75bp paired-end libraries from 20 tissues and 2 cell types from neonatal crossbred dairy goats. Gene level expression estimates, for the goat mini-atlas, ... -
An mRNA expression atlas for the domestic chicken generated by the meta-analysis of RNA-seq datasets
The chicken (Gallus gallus) is widely used as a model in developmental biology and is also an important livestock species. We have created an mRNA expression atlas for the domestic chicken spanning major tissue types and ... -
De novo gene and transcript models created for a gene expression atlas of the domestic water buffalo (Bubalus bubalis)
The domestic water buffalo (Bubalus bubalis) makes a major contribution to the global agricultural economy in the form of milk, meat, hides and draught power. The global water buffalo population is predominantly found in ... -
Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy
Polysaccharide utilisation loci (PUL) are regions within the genomes of Bacteroidetes that encode all the necessary machinery for the cleavage of particular carbohydrates. Prediction of PUL from genomic data alone involves ... -
Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli
Salmonella enterica and Escherichia coli are bacterial species that colonise different animal hosts with sub-types that can cause life-threatening infections in humans. Source attribution of zoonoses is an important goal ...
