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Dynamical analysis of bacteria in microscopy movies

Vissers, Teun; Koumakis, Nick; Hermes, Michiel; Brown, Aidan T; Schwarz-Linek, Jana; Dawson, Angela; Poon, Wilson CK

This repository contains data and code related to the manuscript "Dynamical analysis of bacteria in microscopy movies", PloS One, 14, 6, e0217823, 2019 (https://doi.org/10.1371/journal.pone.0217823). Please find more ...

Experimental data for the article "Predictable Properties of Fitness Landscapes Induced by Adaptational Tradeoffs"

Waclaw, Bartlomiej; Direito, Susana; Das, Suman; Allen, Rosalind; Krug, Joachim

We used strains from Marcusson et al. (2009) (courtesy of Douglas Huseby and Diarmaid Hughes). The strains are isogenic derivatives of MG1655, a K12 strain of the bacterium E. coli, with specific point mutations or gene ...

Dataset for: "A combined rheometry and imaging study of viscosity reduction in bacterial suspensions"

Martinez, Vincent; Clement, Eric; Arlt, Jochen; Douarche, Carine; Dawson, Angela; Schwarz-Linek, Jana; Creppy, Adama; Skultety, Viktor; Morozov, Alexander; Auradou, Harold; Poon, Wilson

Dataset supporting the manuscript "A combined rheometry and imaging study of viscosity reduction in bacterial suspensions" accepted in PNAS.

Dynamic optical rectification and delivery of active particles

Koumakis, Nick

We use moving light patterns to control the motion of Escherichia coli bacteria whose motility is photoactivated. Varying the pattern speed controls the magnitude and direction of the bacterial flux, and therefore the ...