Morphologically Constrained and Data Informed Cell Segmentation of Budding Yeast

Abstract

This is all the data associated with the paper "Morphologically Constrained and Data Informed Cell Segmentation of Budding Yeast": a description of the cell segmentation software developed in the Swain Laboratory for segmenting microscopy images of yeast (Saccharomyces cerevisiae) cells in the ALCATRAS microfluidic device.

Included are the raw images, ground truth segmentation and the automated segmentations of all the software tested. The format is the data structure used with the published software (available at https://github.com/pswain/segmentation-software).

The data set includes images both from our own lab (https://academic.oup.com/bioinformatics/article-abstract/doi/10.1093/bioinformatics/btx550/4103414/Morphologically-Constrained-and-Data-Informed-Cell) and from that of Professor Nan Hao (in Press at PNAS, 10.1073/pnas.1703379114). Please cite both.