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Depositordc.contributorWatson, Mick
Funderdc.contributor.otherBBSRC - Biotechnology and Biological Sciences Research Councilen_UK
Funderdc.contributor.otherScottish Governmenten_UK
Data Creatordc.creatorWatson, Mick
Date Accessioneddc.date.accessioned2018-09-18T08:58:54Z
Date Availabledc.date.available2018-09-18T08:58:54Z
Citationdc.identifier.citationWatson, Mick. (2018). Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy, [dataset]. The Roslin Institute and Royal (Dick) School of Veterinary Studies. University of Edinburgh. https://doi.org/10.7488/ds/2438.en
Persistent Identifierdc.identifier.urihttps://hdl.handle.net/10283/3182
Persistent Identifierdc.identifier.urihttps://doi.org/10.7488/ds/2438
Dataset Description (abstract)dc.description.abstractPolysaccharide utilisation loci (PUL) are regions within the genomes of Bacteroidetes that encode all the necessary machinery for the cleavage of particular carbohydrates. Prediction of PUL from genomic data alone involves the identification of carbohydrate-active enzymes (CAZymes) co-localised with susCD gene pairs. Here we present the open prediction of PUL in 5414 public Bacteroidetes genomes, and an open-source pipeline to reproduce or extend the results. The PULpy code "Open prediction of Polysaccharide Utilisation Loci (PUL)" can be obtained via GitHub as documented in the attached README.txt file.en_UK
Dataset Description (TOC)dc.description.tableofcontentssamples.tsv describes the 5414 genomes used in the analysis all.pul.tsv is a data table providing one row of information for each gene within each PUL prediction sum.pul.tsv is a data table providing one row of information for each PULen_UK
Languagedc.language.isoengen_UK
Publisherdc.publisherThe Roslin Institute and Royal (Dick) School of Veterinary Studies. University of Edinburghen_UK
Relation (Is Referenced By)dc.relation.isreferencedbyhttps://doi.org/10.1101/421024
Rightsdc.rightsCreative Commons Attribution 4.0 International Public Licenseen
Subjectdc.subjectGenomeen_UK
Subjectdc.subjectBacteroidetesen_UK
Subjectdc.subjectPolysaccharide utilisation locien_UK
Subjectdc.subjectPULen_UK
Subjectdc.subjectcarbohydratesen_UK
Subjectdc.subjectCAZymesen_UK
Subject Classificationdc.subject.classificationBiological Sciencesen_UK
Titledc.titleOpen prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpyen_UK
Typedc.typedataseten_UK

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