Characterisation of a second gain of function EDAR variant, encoding EDAR380R, in East Asia

Schoenebeck, Jeffrey; Riddell, Jon; Headon, Denis

Date Available

2020-06-01

Type

dataset

Data Creator

Schoenebeck, Jeffrey
Riddell, Jon
Headon, Denis

Publisher

University of Edinburgh. Roslin Institute and Royal (Dick) School of Veterinary Studies.

Metadata

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Citation

Schoenebeck, Jeffrey; Riddell, Jon; Headon, Denis. (2020). Characterisation of a second gain of function EDAR variant, encoding EDAR380R, in East Asia, [dataset]. University of Edinburgh. Roslin Institute and Royal (Dick) School of Veterinary Studies.. https://doi.org/10.7488/ds/2798.

Description

Bash scripts, R scripts, rehh output data.

Description of contents (764bytes)

R script designed to be called on by "Filter_VCF_and CALL_ON_R_v2.sh". Runs rehh on 2Mb interval. Arguments are provided when running the bash script. (2.115Kb)

Bash script used to filter vcf files. Call upon R to run "rehh_job_array.R" . (3.541Kb)

Bash script to identify transversions and transitions of comparable allele frequencies to EDAR alleles. (2.571Kb)

Rmarkdown document documents EHH analysis and the production of plots. Use with "R_SUmmaryStats_2020MAR31.RData" file. (11.61Kb)

Directory containing interval data produced by R rehh package. Files in this directory were analysed with R_EJHG.Rmd (47.88Mb)

R data to use with R_EJHG.Rmd file. (76.07Mb)

license_text (17.00Kb)

The following licence files are associated with this item: