XP-EHH and XP-CLR scores across water buffalo and cattle breeds
Date Available
2020-09-24Type
datasetData Creator
Prendergast, JamesDutta, Prasun
Talenti, Andrea
Publisher
University of Edinburgh. Roslin InstituteRelation (Is Version Of)
https://www.bomabrowser.com/waterbuffalo/Relation (Is Referenced By)
https://doi.org/10.1038/s41467-020-18550-1Metadata
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Citation
Prendergast, James; Dutta, Prasun; Talenti, Andrea. (2020). XP-EHH and XP-CLR scores across water buffalo and cattle breeds, [dataset]. University of Edinburgh. Roslin Institute. https://doi.org/10.7488/ds/2849Description
This dataset consists of XP-EHH and XP-CLR scores calculated using the hapbin (https://github.com/evotools/hapbin) and xpclr (https://github.com/hardingnj/xpclr) software with default parameters across 79 water buffalo and 294 cattle whole genome sequences. The breeds being compared and the chromosome number are indicated in each file name. The water buffalo positions are with respect to the UOA_WB_1 genome assembly and the cattle with respect to ARS-UCD1.2. This dataset replaces an earlier version (https://doi.org/10.7488/ds/2721).
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