XP-EHH and XP-CLR scores across water buffalo and cattle breeds

Prendergast, James; Dutta, Prasun; Talenti, Andrea

Depositor	dc.contributor	Prendergast, James	en
Funder	dc.contributor.other	BBSRC - Biotechnology and Biological Sciences Research Council
Funder	dc.contributor.other	Bill & Melinda Gates Foundation
Data Creator	dc.creator	Prendergast, James
Data Creator	dc.creator	Dutta, Prasun
Data Creator	dc.creator	Talenti, Andrea
Date Accessioned	dc.date.accessioned	2020-06-16T13:39:03Z
Date Available	dc.date.available	2020-09-24
Citation	dc.identifier.citation	Prendergast, James; Dutta, Prasun; Talenti, Andrea. (2020). XP-EHH and XP-CLR scores across water buffalo and cattle breeds, [dataset]. University of Edinburgh. Roslin Institute. https://doi.org/10.7488/ds/2849	en
Persistent Identifier	dc.identifier.uri	https://hdl.handle.net/10283/3665
Persistent Identifier	dc.identifier.uri	https://doi.org/10.7488/ds/2849
Dataset Description (abstract)	dc.description.abstract	This dataset consists of XP-EHH and XP-CLR scores calculated using the hapbin (https://github.com/evotools/hapbin) and xpclr (https://github.com/hardingnj/xpclr) software with default parameters across 79 water buffalo and 294 cattle whole genome sequences. The breeds being compared and the chromosome number are indicated in each file name. The water buffalo positions are with respect to the UOA_WB_1 genome assembly and the cattle with respect to ARS-UCD1.2. This dataset replaces an earlier version (https://doi.org/10.7488/ds/2721).
Dataset Description (TOC)	dc.description.tableofcontents	Information about the file/directory structure.
Publisher	dc.publisher	University of Edinburgh. Roslin Institute
Relation (Is Version Of)	dc.relation.isversionof	https://www.bomabrowser.com/waterbuffalo/
Relation (Is Referenced By)	dc.relation.isreferencedby	https://doi.org/10.1038/s41467-020-18550-1
Relation (Is Referenced By)	dc.relation.isreferencedby	Dutta, P., Talenti, A., Young, R. et al. Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication. Nat Commun 11, 4739 (2020). https://doi.org/10.1038/s41467-020-18550-1
Supersedes	dc.relation.replaces	https://doi.org/10.7488/ds/2721
Subject	dc.subject	genomics
Subject	dc.subject	selection
Subject	dc.subject	XP-CLR
Subject	dc.subject	XP-EHH
Subject	dc.subject	water buffalo
Subject	dc.subject	cattle
Subject	dc.subject	domestication
Subject	dc.subject	selective sweep
Subject Classification	dc.subject.classification	Veterinary Sciences Agriculture and related subjects
Title	dc.title	XP-EHH and XP-CLR scores across water buffalo and cattle breeds
Type	dc.type	dataset