Browsing College of Science & Engineering by Title
Now showing items 1-20 of 835
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A 1-dimensional statistical mechanics model for nucleosome positioning on genomic DNA
The first level of folding of DNA in eukaryotes is provided by the so-called “10-nm chromatin fibre”, where DNA wraps around histone proteins (∼10 nm in size) to form nucleosomes, which go on to create a zig-zagging ... -
19F-centred NMR analysis of mono-fluorinated compounds. NMR spectra obtained from 3-fluoro-3-deoxy-D-glucose
The folder contains raw NMR spectra of 3-fluoro-3-deoxy-D-glucose, which were acquired using Bruker NMR spectrometers using a range of NMR experiments. Dataset is the subject of RSC Advances article entitled 19F-centred ... -
1D NMR of Scotch Whisky - Standard Sample Set
NMR spectra for Scotch Whisky samples. Spectra acquired as per the method previously published by Kew et al (Magn Reson Chem. 2017 Sep;55(9):785-796. doi: 10.1002/mrc.4621). Briefly, 500 μL of Scotch Whisky was added to a ... -
2DChebClass
We present a Matlab implementation of a novel, efficient pseudo-spectral collocation scheme for the solution of stiff, non-local, non-linear PDEs in one and two spatial dimensions. In particular, we compute the non-local ... -
The 2nd Automatic Speaker Verification Spoofing and Countermeasures Challenge (ASVspoof 2017) Database, Version 2
This is a database used for the Second Automatic Speaker Verification Spoofing and Countermeasuers Challenge, for short, ASVspoof 2017 (http://www.asvspoof.org) organized by Tomi Kinnunen, Md Sahidullah, Héctor Delgado, ... -
96kHz version of the CSTR VCTK Corpus
This dataset includes 96kHz version of the CSTR VCTK Corpus including speech data uttered by 109 native speakers of English with various accents. The main dataset can be found at https://doi.org/10.7488/ds/1994 (containing ... -
A General Workflow for Characterization of Nernstian Dyes and Their Effects on Bacterial Physiology
The electrical membrane potential (Vm) is one of the components of the electrochemical potential of protons across the biological membrane (proton motive force), which powers many vital cellular processes. Because Vm also ... -
Absolute units in Arabidopsis clock models up to U2020.3
Starting from the P2011 model of the circadian clock in Arabidopsis thaliana, this project corrects theoretical issues (steady-state binding assumption for the Evening Complex, EC) to form an intermediate model (published ... -
Accounting for the Complex Hierarchical Topology of EEG Functional Connectivity in Network Binarisation
Herein are the network adjacency matrices, scripts and MATLAB functions used to provide the results in "Accounting for the complex hierarchical topology of EEG functional connectivity in network binarisation". Research ... -
Acoustothermal atomization of water nanofilms
This data folder contains the output data from all molecular dynamics simulations carried out in this paper: Pillai et al. https://doi.org/10.1103/PhysRevLett.121.104502 . -
Acted clear speech corpus
(LISTA Consortium: (i) Language and Speech Laboratory, Universidad del Pais Vasco, Spain and Ikerbasque, Spain; (ii) Centre for Speech Technology Research, University of Edinburgh, UK; (iii) KTH Royal Institute of Technology, Sweden; (iv) Institute of Computer Science, FORTH, Greece, 2013-09-24)Single male native British English talker recorded producing 25 TIMIT sentences in 5 conditions, two natural: (i) quiet, (ii) while the talker listened to high-intensity speech-shaped noise, and three acted: (i) as if to ... -
Adaptive plasticity in the gametocyte conversion rate of malaria parasites
Malaria parasites in the host replicate asexually and, during each replication cycle, some asexuals transform into sexual stages that enable between-host transmission. It is not understood why the rate of conversion to ... -
Adaptive Sum of Markov Chains for Modelling 3D Blockage in mmWave V2I Communications
This data set contains the MATLAB software used to reproduce results in the paper entitled "Adaptive Sum of Markov Chains for Modelling 3D Blockage in mmWave V2I Communications". It has been accepted for publication by ... -
Additional and raw data from "Role of the alga Chondracanthus chamissoi (C. Agardh) Kützing 1843 in the induction of primary settlement of mytilids larvae"
Data supporting the manuscript "Role of the alga <i>Chondracanthus chamissoi</i> (C. Agardh) Kützing 1843 in the induction of primary settlement of mitilids larvae" Abstract: Mytilid aquaculture commonly depends on wild ... -
Additional Experimental Data of a Floating Cylinder in a Wave Tank - Verification Experiments
The presented experimental results provide additional data to a previously published investigation of a floating cylinder under regular wave conditions (https://doi.org/10.7488/ds/2627). Three test series are added to ... -
Additional files for 'Comparison of the protein-coding genomes of three deep-sea, sulfur-oxidising bacteria: "Candidatus Ruthia magnifica", "Candidatus Vesicomyosocius okutanii" and Thiomicrospira crunogena'
Genome-wide protein sets input to OrthoMCL, OrthoMCL output, Perl script to count cross-species occurence of OrthoMCL groups, and output of Perl script, as used by McGill and Barker (2017, BMC Research Notes 10:296, ... -
Additional files for 'DNA sonification for public engagement in bioinformatics'
Supplementary data for Plaisier H, Meagher TR and Barker D, 'DNA sonification for public engagement in bioinformatics' (2021, BMC Research Notes 14:243, doi:10.1186/s13104-021-05685-7). For further details, see 'README.txt' ... -
Additional files for 'Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 2,4-diaminobutanoic acid (2,4-DAB)'
Supplementary data for Mantas MJQ, Nunn PB, Ke Z, Codd GA and Barker D 'Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 2,4-diaminobutanoic acid (2,4-DAB)' (2021, Phytochemistry ... -
Additional files for 'Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 3-N-methyl-2,3-diaminopropanoic acid (BMAA)'
Supplementary data for Mantas MJQ, Nunn PB, Codd GA and Barker D 'Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 3-N-methyl-2,3-diaminopropanoic acid (BMAA)' (in prep.).
